Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rara

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver
strain
C57BL/6
tissue
liver
gender
male
age
3 Month
antibody
RARα antibody

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Grand in liquid nitrogen, then fixed, sonication, pull down by RARα antibody from Santa Cruz (sc-551x). Illumina True-Seq Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
36771963
Reads aligned (%)
87.9
Duplicates removed (%)
67.8
Number of peaks
18155 (qval < 1E-05)

mm9

Number of total reads
36771963
Reads aligned (%)
87.8
Duplicates removed (%)
68.0
Number of peaks
18181 (qval < 1E-05)

Base call quality data from DBCLS SRA